The WGCNA package contains function corAndPvalue that will calculate
the correlation and the associated p-values for two matrices more
efficiently and quickly.
HTH,

Peter

On Tue, May 31, 2011 at 12:03 AM, Unger, Kristian, Dr.
<un...@helmholtz-muenchen.de> wrote:
> Hi there,
>
> I wonder if there is a way of efficiently generating a correlation matrix of 
> two expression matrices. I want to correlate miRNA and mRNA expression and 
> used the following code:

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