Thank you, Steve. Initially I tried to choose b/w cytoscape and pajek, among other bunch of software. I did not realize the existence of RCytoscape; otherwise, I would probably use that one.
Weiwei On Sat, May 28, 2011 at 9:25 AM, Steve Lianoglou < mailinglist.honey...@gmail.com> wrote: > Hi, > > On Fri, May 27, 2011 at 5:32 PM, Weiwei Shi <helprh...@gmail.com> wrote: > > Hi there, > > > > I need a network builder and it can change the node size and color; I am > not > > sure if network package in R can do this or not. The other functions I > > wanted have been found in that package. > > > > BTW, if there is another package in R relating to this, please suggest > too. > > I'm not actually sure what you're looking for, but from trying to > piece together the other emails in this thread maybe you are looking > for a way to control graph/network layout in some GUI form? > > There is a bioconductor package called RCytoscape that can "drive" > cytoscape from R, allowing you to draw a network you have loaded up in > your R session and tweak different properties of nodes, edges, etc: > > http://www.bioconductor.org/packages/release/bioc/html/RCytoscape.html > > Maybe it can help you? I'm not sure if this is what you're asking for, > though, so I could be way off the mark. > > > HTH, > -steve > > -- > Steve Lianoglou > Graduate Student: Computational Systems Biology > | Memorial Sloan-Kettering Cancer Center > | Weill Medical College of Cornell University > Contact Info: http://cbio.mskcc.org/~lianos/contact > -- Weiwei Shi, Ph.D Research Scientist "Did you always know?" "No, I did not. But I believed..." ---Matrix III [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
