I am using PAM with k = 10 clusters, but I only get one cluster ID for all my
observations. I couldn't find any discussion about this in the help file, or
mailing lists.
Is there a reasonable explanation for this result ?
cIDs <- pam(all, 10, cluster.only = TRUE, do.swap = FALSE)
> table(cIDs)
cIDs
0
16671
The matrix of observations can be found at :
http://129.94.136.7/file_dump/dario/all.obj
I'm using R version 2.13.0 (2011-04-13) on Platform: x86_64-unknown-linux-gnu
(64-bit) and have cluster_1.13.3.
--------------------------------------
Dario Strbenac
Research Assistant
Cancer Epigenetics
Garvan Institute of Medical Research
Darlinghurst NSW 2010
Australia
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