On 11.05.2011 16:51, joe j wrote:
Dear all, I am trying to run the function "lambdaSets" using the package "RBGL". This package uses another package "graph" which has been removed from the CRAN repository, but is available at the archive (http://cran.r-project.org/src/contrib/Archive/graph/).
They are removed in order not to double host them. In the first place, both are BioConductor packages and you can get them using install.packages(c("graph", RBGL"), dependencies=TRUE)) after chooseBioCmirror() and setRepositories().
I installed the package from the R menu at "install packages from local zip files" (after downloading the "graph_1.30.0.tar.gz" file, unzipping it and making it a zip file; gz is not recognized by R.). I get no warning here so I assumed installation went well. However, when I type "require(RBGL)" I get the error message that: "Failed with error: ‘'graph' is not a valid installed package’".
You downloaded the source package (in a tar.gz file) but used the mechanism to install a binary package (in a zip file). Either learn how to install from sources (see manual R Installation and Administration) or use BioConductor mirrors.
Uwe Ligges
I am using R version 2.12.2 (2011-2-25). I am a new user so your advice would be of great help. Best wishes, Joe ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
