On 05/05/2011 11:06 AM, swaraj basu wrote:
Dear All,
I am trying to build a package for a set of functions. I am
able to build the package and its working fine. When I check it with
R CMD check
I get a following warning : no visible global function
definition for ‘biocLite’
I have used biocLite to load a user defined library from
within a function if that library is not pre-installed
if(is.element(annotpkg, installed.packages()[,1]) == "FALSE"){
source("http://www.bioconductor.org/biocLite.R";)
biocLite(annotpkg)
library(annotpkg,character.only=TRUE)
}
Should I ignore this error or there is a workaround for the
warning. My package is working fine though still I guess the warning has to
have significance. Please help in clarifying this
warning.
Better to ask on the Bioconductor list
http://bioconductor.org/help/mailing-list/
where you'll hit an audience familiar with annotation packages. As a
possible model, see affy::cdfFromBioC or annotate::getAnnMap
Martin
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