Hi all,
I am trying to compile Rgraphiz on Windows 7 64bit with R-2.13.0. I have
installed
Rtools213.exe from [1]. The 64bit packages in [2] provided me with the 64 bit
version
of graphviz. After intalling the binary version Rgraphviz 1.30 (in 32bit) it
complains (as
expected) that:
> library(Rgraphviz)
Error: package 'Rgraphviz' is not installed for 'arch=x64'
I don't understand why the 64 bit version of graphiz is provided but not one
for
Rgraphviz.
Have I missed it somewhere? In any case, it is suggested to build it from
source, so I tried
following the steps of the README from the source package of Rgraphviz (see
below). I have the
same error than in [3]. Does anyone know what is going on or if Kasper found a
solution back
in 2009?
thanks in advance,
Cheers,
Ben
C:\BenSave>R --arch x64 CMD build --binary .\Rgraphviz
--binary is deprecated
* checking for file '.\Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=C:\/BenSave\/GoodiesWin64\/graphviz
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
GRAPHVIZ_INSTALL_SUBMINOR=3
Using the following compilation and linking flags for Rgraphviz
PKG_CPPFLAGS=-IC:\/BenSave\/GoodiesWin64\/graphviz/include/graphviz
PKG_LIBS=-LC:\/BenSave\/GoodiesWin64\/graphviz/bin -lgvc-4 -lgraph-4 -lcdt-4
GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
cygwin warning:
MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/x64/Makeconf
Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/x64/Makeco
nf
CYGWIN environment variable option "nodosfilewarning" turns off this warning.
Consult the user's guide for more details about POSIX paths:
http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c LL_funcs.c -o LL_funcs.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c Rgraphviz.c -o Rgraphviz.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c RgraphvizInit.c -o RgraphvizInit.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c agopen.c -o agopen.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c agread.c -o agread.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c agwrite.c -o agwrite.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c bezier.c -o bezier.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c buildEdgeList.c -o buildEdgeList.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c buildNodeList.c -o buildNodeList.o
x86_64-w64-mingw32-gcc -I"C:/PROGRA~1/R/R-213~1.0/include" -IC:/BenSave/GoodiesW
in64/graphviz/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
-O2 -Wall -std=gnu99 -c doLayout.c -o doLayout.o
doLayout.c: In function 'getEdgeLocs':
doLayout.c:131:17: error: 'textlabel_t' has no member named 'p'
doLayout.c:132:17: error: 'textlabel_t' has no member named 'p'
doLayout.c: In function 'getNodeLayouts':
doLayout.c:243:13: error: 'textlabel_t' has no member named 'p'
doLayout.c:244:13: error: 'textlabel_t' has no member named 'p'
make: *** [doLayout.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'
* removing 'C:/Users/BVINSO~1/AppData/Local/Temp/Rtmpz6M19V/Rinst76da24d2/Rgraph
viz'
-----------------------------------
ERROR: package installation failed
[1] http://www.murdoch-sutherland.com/Rtools/
[2] http://www.stats.ox.ac.uk/pub/Rtools/goodies/Win64No_/
[3] https://stat.ethz.ch/pipermail/bioconductor/2009-March/026585.html
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