Amos Folarin <amosfolarin <at> gmail.com> writes: > I was wondering I'm going about this in the correct way. I need to test if > there are coding sequences or exons in hg19 which match a string of 100bp > "D" i.e. [A,G or T]. However I'm getting a strange result. > > I get a hit on chr7, using the 100bp search however when I search with 60bp > sequence of "D" I don't get any hits. >
Try posting this to the Bioconductor e-mail list, where you will have a much better likelihood of getting useful advice. Only a few hard-core bioinformatics people on this list. (Do mention that you posted here first.) Ben Bolker ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
