Steve,

I use filled.contour but have a semicolon, ";", between the two axis calls. Do you need one after

"axis(1, seq(450000 , 580000, by = 10000))"

?

Clint

--
Clint Bowman                    INTERNET:       cl...@ecy.wa.gov
Air Quality Modeler             INTERNET:       cl...@math.utah.edu
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On Fri, 1 Apr 2011, steve_fried...@nps.gov wrote:

Hi Peter,

Thanks for taking the time to consider the problem. I realize the procedure
is not reproducible. I use a 4 dimensional netCDF file (4.2 GB) in size to
pull data into this process. Nobody in their right mind should work with
such things. It's a spatial temporal database with 10 years of daily data
in a irregular area spanning 405 x 287 cells.

Anyway, I tried your suggestion adding a { in front of the for loop and a
closing } following the last line.

It did not work.


Steve Friedman Ph. D.
Ecologist  / Spatial Statistical Analyst
Everglades and Dry Tortugas National Park
950 N Krome Ave (3rd Floor)
Homestead, Florida 33034

steve_fried...@nps.gov
Office (305) 224 - 4282
Fax     (305) 224 - 4147



            Peter Ehlers
            <ehlers@ucalgary.
            ca>                                                        To
                                      "steve_fried...@nps.gov"
            04/01/2011 05:08          <steve_fried...@nps.gov>
            PM                                                         cc
                                      "r-help@r-project.org"
                                      <r-help@r-project.org>
                                                                  Subject
                                      Re: [R] filled contour plot with
                                      contour lines










Aren't you missing a set of parentheses?
I can't run your code since it's not reproducible, but to
my aging eyes it seems that you need a set of '{}' around
the contents of your loop:

 for(j in 1:(varsize[4]-1)) { loop stuff }

Peter Ehlers

On 2011-04-01 11:48, steve_fried...@nps.gov wrote:

I'm stumped,  can anyone find my error in this sequence.

  for(j in 1:(varsize[4]-1))
       temp<- get.var.ncdf(nc=input,
varid="p_foraging",c(1,1,j),c(varsize[1],varsize[2],1))
          filled.contour(x, y, temp, color = terrain.colors,
              plot.title = title(main = paste("Everglades Wood Stork
Foraging Potential \nYear", (2000+j)),
              xlab = "UTM East", ylab = "UTM North") ,
              plot.axes = { contour(temp, add=T)
                 axis(1, seq(450000 , 580000, by = 10000))
                 axis(2, seq(2800000,4000000, by = 10000)) },
              key.title = title(main="Probability") ,
              key.axes = axis(4, seq(0 , 1 , by = 0.1))


The routine will work in a modified form without adding the coordinates
(the axis lines) but when I include these the routine produces various
errors, such as "dimension mismatch", or "unexpected end encountered."

I tried to follow the example on filled.contour help page.

Thanks in advance
    Steve

Steve Friedman Ph. D.
Ecologist  / Spatial Statistical Analyst
Everglades and Dry Tortugas National Park
950 N Krome Ave (3rd Floor)
Homestead, Florida 33034

steve_fried...@nps.gov
Office (305) 224 - 4282
Fax     (305) 224 - 4147

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and provide commented, minimal, self-contained, reproducible code.


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and provide commented, minimal, self-contained, reproducible code.

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