Hi everybody, I tried to analyze a custom Affymetrix 3'-biased Array. So I wanted to make a cdf package. (My CDF file size is 1.12Go).
I tried several methods but the same error occured Method 1 > #Set the working directory > setwd("D:/Analyse R/Cel files") > #library to create cdf env > library("makecdfenv") >#Create cdf environment >pkgpath <- tempdir() >make.cdf.package("file.cdf", cdf.path=getwd(), compress=FALSE, species = "Homo_sapiens", package.path = pkgpath, verbose=TRUE) dir(pkgpath) Method 2 #Set the working directory setwd("D:/Analyse R/Cel files") #library to create cdf env library("makecdfenv") #Create cdf environment env <- make.cdf.env("file.cdf") >Reading CDF file. >Error in .Call("reaD file", as.character(file), as.integer(3), as.integer(compress), :promise already under evaluation: recursive default argument reference or earlier problems? The two methods take about one hour and use all the RAM of my computer (8Go). Is it a limit of memory? Is it a non appropriated method for my array? Thanks in advance for your response, Elodie -- View this message in context: http://r.789695.n4.nabble.com/BioC-Make-cdf-package-error-tp3310927p3310927.html Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.