Hi everybody,
I tried to analyze a custom Affymetrix 3'-biased Array. So I wanted to make
a cdf package. (My CDF file size is 1.12Go).
I tried several methods but the same error occured
Method 1
> #Set the working directory
> setwd("D:/Analyse R/Cel files")
> #library to create cdf env
> library("makecdfenv")
>#Create cdf environment
>pkgpath <- tempdir()
>make.cdf.package("file.cdf",
cdf.path=getwd(),
compress=FALSE, species = "Homo_sapiens",
package.path = pkgpath,
verbose=TRUE)
dir(pkgpath)
Method 2
#Set the working directory
setwd("D:/Analyse R/Cel files")
#library to create cdf env
library("makecdfenv")
#Create cdf environment
env <- make.cdf.env("file.cdf")
>Reading CDF file.
>Error in .Call("reaD file", as.character(file), as.integer(3),
as.integer(compress), :promise already under evaluation: recursive default
argument reference or earlier problems?
The two methods take about one hour and use all the RAM of my computer
(8Go).
Is it a limit of memory?
Is it a non appropriated method for my array?
Thanks in advance for your response,
Elodie
--
View this message in context:
http://r.789695.n4.nabble.com/BioC-Make-cdf-package-error-tp3310927p3310927.html
Sent from the R help mailing list archive at Nabble.com.
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
