Hello, All,
GWAF 1.2
R.Version() is below.
system(lme.batch.imputed(
phenfile = 'phenfile.csv',
genfile = 'CARe_imputed_release.0.fhsR.gz',
pedfile='pedfile.csv',
phen='phen1',
covar=c('covar1','covar2'),
kinmat='imputed_fhs.kinship.RData',
outfile='imputed.FHS.IBC.GWAF.LME.output.0.txt'
))
Gives the error messages:
Error in coxme.varcheck(ncluster, varlist, n, gvars, groups, sparse, rescale, :
object 'kmat' not found
Error in lme.cov.out$theta : $ operator is invalid for atomic vectors
Might anyone know why?
Thank you for your time!
Jim
---------------------------------------------------
> R.Version()
$platform
[1] "x86_64-apple-darwin9.6.0"
$arch
[1] "x86_64"
$os
[1] "darwin9.6.0"
$system
[1] "x86_64, darwin9.6.0"
$status
[1] ""
$major
[1] "2"
$minor
[1] "12.1"
$year
[1] "2010"
$month
[1] "12"
$day
[1] "16"
$`svn rev`
[1] "53855"
$language
[1] "R"
$version.string
[1] "R version 2.12.1 (2010-12-16)"
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