Is this what you want?
attr(VarCorr(merobject)[[1]], "stddev")
Alternately, look at:
getMethod("VarCorr", signature = "mer")
For what is happening behind the scenes and why I chose what I did to extract
the standard deviations
Cheers,
Josh
On Jan 19, 2011, at 11:32, Stephanie Cooke <cooke.stepha...@gmail.com> wrote:
> I have a loop that I would like to use to extract the "stddev" for
> each itteration so I can average the "stddev" for all the runs. It
> would be helpful to know how to extract the "stddev" for each run from
> the VarCorr. Thanks
>
> MCruns<-1000
> sighatlvec<-rep(NA,MCruns)
> sighatbvec<-rep(NA,MCruns)
> sighatevec<-rep(NA,MCruns)
>
> for(mc in 1:MCruns)
> {
>
> samples<-(sqrt(sigbsq)*rnorm(6))
> labs<-(sqrt(siglsq)*rnorm(2))
> errors<-(sqrt(sigesq)*rnorm(24))
> y<-errors+samples[sampfac]+labs[labfac]
> lmer<-lmer(y~1+(1|sampfac)+(1|labfac))
> print(VC<-VarCorr(lmer))
> }
>
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