Hi, I made a bit of progress. I went to open-mpi.org and downloaded mpi software and installed it, which went smoothly. Then I re- Executed > install.packages( 'Rmpi' ) which worked, except this time it complained about rsprng. I went to sprng.cs.fsu.edu and downloaded sprng4 and tried installing it. .configure went fine, but make failed. Here's the the failure:
mpif77 -DHAVE_CONFIG_H -I. -I. -I../.. -I../../include -I../../include -DSPRNG_MPI -g -O2 -c -o sprngf_simple_mpi_tmp-sprngf-simple_mpi.o `test -f 'sprngf-simple_mpi.F' || echo './'`sprngf-simple_mpi.F mpif77 -g -O2 -o sprngf-simple_mpi.tmp --showme:link -I/usr/local/include -pthread sprngf_simple_mpi_tmp-sprngf-simple_mpi.o -L../../lib -lsprng -lm -lstdc++ -lm -g -O2 -o sprngf-simple_mpi.tmp -I/usr/local/include -pthread sprngf_simple_mpi_tmp-sprngf-simple_mpi.o -L../../lib -lsprng -lm -lstdc++ -lm -pthread -L/usr/local/lib -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl mv: cannot stat `sprng-simple_mpi.tmp': No such file or directory make[4]: *** [sprng_mpi_test] Error 1 I issued: > library( 'Rmpi' ) which didn't complain. I don't want to ignore the failure of rsprng package install, however. Can somebody please assist me as to how I can get sprng4 installed? Thank you. Tena Sakai tsa...@gallo.ucsf.edu On 1/7/11 3:49 PM, "Tena Sakai" <tsa...@gallo.ucsf.edu> wrote: > Hi, > > I am having a problem with installing Rmpi package on redhat linux machine. > The R I am using is version 2.10.1. Here¹s what happens. > >> install.packages( 'Rmpi' ) > --- Please select a CRAN mirror for use in this session --- > Loading Tcl/Tk interface ... done > trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/Rmpi_0.5-9.tar.gz' > Content type 'application/x-gzip' length 87953 bytes (85 Kb) > opened URL > ================================================== > downloaded 85 Kb > > * installing *source* package âRmpiâ ... > checking for gcc... gcc -std=gnu99 > checking for C compiler default output file name... a.out > checking whether the C compiler works... yes > checking whether we are cross compiling... no > checking for suffix of executables... > checking for suffix of object files... o > checking whether we are using the GNU C compiler... yes > checking whether gcc -std=gnu99 accepts -g... yes > checking for gcc -std=gnu99 option to accept ISO C89... none needed > checking how to run the C preprocessor... gcc -std=gnu99 -E > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for ANSI C header files... yes > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking mpi.h usability... no > checking mpi.h presence... no > checking for mpi.h... no > configure: error: "Cannot find mpi.h header file" > ERROR: configuration failed for package âRmpiâ > * removing â/usr/local/lib64/R/library/Rmpiâ > > The downloaded packages are in > â/tmp/Rtmp1J1kDj/downloaded_packagesâ > Updating HTML index of packages in '.Library' > Warning message: > In install.packages("Rmpi") : > installation of package 'Rmpi' had non-zero exit status >> library ('Rmpi' ) > Error in library("Rmpi") : there is no package called 'Rmpi' >> > > I think it is upset because the file mpi.h is missing. Am I right? If so, > How would I cure this problem? And if not, what must I do? > > Please help. Thank you. > > Tena Sakai > tsa...@gallo.ucsf.edu > > [[alternative HTML version deleted]] > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
