Hi, I am using R and tried to normalize the data within each sample group using RMA. When I tried to import the all the normalized expression data as a single text file and make a boxplot, it showed discrepancy among the sample groups. I tried to scale them or re-normalize them again, so that it can be used for further analysis. Unfortunately, I did not manage it on using AffyPLM package. Would you please help me out with this problem.
Thanks in advance. Best regards, H. Nawaz -- View this message in context: http://r.789695.n4.nabble.com/scaling-on-normlized-data-set-tp2996771p2996771.html Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
