Correcting Karena's solution:
for(i in 1:22) {
chrn <- paste("chr",i,sep="")
chrn=MEDIPS.readAlignedSeqences(BSgenome="hg19", file=chrn,numrows=
?????) # no quotes around chrn
chrn=MEDIPS.genomeVector(data=chrn, bin_size=50,extend=250)
frames=????? # I don't know how you get this variable
...
out_file <- paste("frames.chr", i, ".meth.txt", sep="") # dynamic file name
write.table(frames, file=out_file, sep="\t", quote=F, col.names=T,
row.names=F) # use var you just made
}
Replace the ???s.
Jeff.
On Fri, Oct 1, 2010 at 11:27 AM, qcshare <qcsh...@gmail.com> wrote:
>
> It doesn't work...
> where should change?
> Thanks.
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> View this message in context:
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