Hi, Take a look at the Bioconductor packages, particularly "BSgenome". If that isn't specific enough, you might want to try the Bioconductor mailing list rather than "R-help".
http://www.bioconductor.org/packages/release/bioc/html/BSgenome.html bioconduc...@stat.math.ethz.ch Best regards, Charlie Roosen Mango Solutions -----Original Message----- From: r-help-boun...@r-project.org [mailto:r-help-boun...@r-project.org] On Behalf Of blue jay Sent: 23 August 2010 12:30 To: r-help@r-project.org Subject: [R] DNA sequence Fst Hi, I want to analyse DNA sequence data (mtDNA) in R as in calculate Fst, Heterozygosity and such summary statistics. Package Adagenet converts the DNA sequence into retaining only retaining the polymorphic sites and then calcuates Fst.. but is there any other way to do this? I mean analyse the DNA sequence as it is.. and calculate the statistics? Thanks! [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. LEGAL NOTICE This message is intended for the use o...{{dropped:9}} ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.