Apologies, not sure why that was so garbled first time! - posting again more
simply
I want to use lmer for analysis of response time (& error data) from a
reaction time experiment,
and have a question about specifying the structure of random effects in the
model.
I am using a repeated measures design where 30 subjects judge the laterality
of a hand shown on
a computer screen, completing 18 trials in all combinations of the following
experimental factors
(Angle, 8 levels (hand shown in 8 orientations), Laterality, 2 levels (both
right & left hands shown),
Condition, 3 levels (participant holds own hands in posture a,b or c). With
repeated measures ANOVA
the Error structure is specified as follows:
aov(percentErrors~angle*condition*laterality+Error(subject/(angle*condition*laterality)),data=errorData)
aov(meanRT~angle*condition*laterality+Error(subject/(angle*condition*laterality)),data=RTdata)
where response variables, percentErrors and meanRT, are the percentage of
errors (out of 18 trials) and the mean
reaction time over 18 trials . I need to move to lmer as variance is not
constant across Angle and error data are
bounded (0,1) so I should use the binomial family my first pass (looking
at all main effects & possible interactions) is:
lmer(cbind(numErrors,numCorrect)~angle*condition*laterality+(angle*condition*laterality|subject),family=binomial),data=errorData)
where numErrors+numCorrect = 18 for each subject & Angle-Laterality-Condition
combination
lmer(meanRT~angle*condition*laterality+(angle*condition*laterality|subject),data=RTdata)
I am unsure if this is correct? Help is welcome, thanks - Nuala
----- Original Message -----
From: nuala brady <[email protected]>
Date: Wednesday, July 28, 2010 2:09 pm
Subject: [R] Help with specifiying random effects in lmer - psychology
experiment
To: [email protected]
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> div.Section1 {page:Section1;} --> Hi all, Im
> a psychologist moving from anova to lmer for analysis of
> response time (and error data) from a reaction time experiment,
> and have a question about specifying the structure of random
> effects in the model. Many of the examples I am reading about
> involve split-plot designs where effects are nested within each
> other .... This is not the case here: I am using a typical
> repeated measures design where each subject does
> everything: 30 subjects judge the laterality of a hand
> shown on a computer screen, completing 18 trials in all
> combinations of the following experimental factors (Angle, 8
> levels (hand shown in 8 different orientations), Laterality, 2
> levels (both right and left hands shown), Condition, 3 levels
> (participant holds own hands in posture a,b or c). With
> repeated measures ANOVA the Error structure is specified as
> follows
> aov(percentErrors~angle*condition*laterality+Error(subject/(angle*condition*laterality)),data=errorData)
>
> aov(meanRT~angle*condition*laterality+Error(subject/(angle*condition*laterality)),data=RTdata)
> where response variables, percentErrors and meanRT, are the percentage of
> errors (out of 18 trials) and the mean reaction time over 18 trials I
> need to move to lmer as variance is not constant across Angle and error data
> are bounded (0,1) so I should use the binomial family my first pass
> (looking at all main effects & possible interactions) is:
> lmer(cbind(numErrors,numCorrect)~angle*condition*laterality+(angle*condition*laterality|subject),family=binomial),data=errorData)
> where numErrors+numCorrect = 18 for each subject &
> Angle-Laterality-Condition combination
> lmer(meanRT~angle*condition*laterality+(angle*condition*laterality|subject),data=RTdata)
> I am unsure if this is correct? Help is welcome, thanks - Nuala
>
>
> Nuala Brady
> School of Psychology
> University College Dublin
> Belfield, D4
> IRELAND
>
> +353 (0)1 716 8247
> [email protected]
>
>
>
> [[alternative HTML version deleted]]
> > ______________________________________________
> [email protected] mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-
> project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
Nuala Brady
School of Psychology
University College Dublin
Belfield, D4
IRELAND
+353 (0)1 716 8247
[email protected]
[[alternative HTML version deleted]]
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