Dear Lindsay, If you "pkgconfig" installed by MacPorts. Maybe it likely to be caused by JAGS install.
You'll better to do sudo make uninstall ./configure --prefix=/usr/local --mandir=/usr/local/share/man make sudo make install sudo R CMD INSTALL -l /Library/Frameworks/R.framework/Resources/library rjags_1.0.0-1.tar.gz If it doesn't work... There is the another way. If you can find "jags.pc" under "/usr/local/lib/pkgconfig". sudo cp /usr/local/lib/pkgconfig/jags.pc /opt/local/lib/pkgconfig/ sudo R CMD INSTALL -l /Library/Frameworks/R.framework/Resources/library rjags_1.0.0-1.tar.gz I hope everything will be OK. sincerely Kosuke Lindsay Stirton wrote: > > Thanks Rob, > > Since I already had Xcode 3.0, I re-installed gfortran (from the R > website, not > from the .dmg) and gcc4.2.1 preview. I am afraid the outcome was the > same, i.e. > jags 1.0.1 not found. > > Yes I do use Macports (and formery used Fink, which is still installed). > What > issues does this raise? On your suggestion, I made sure that both were up > to > date--still no success. > > Your offer to send me a template directory to figure things out from is > very > much appreciated. Yes please! > > Lindsay > > > Quoting Rob Goedman <[EMAIL PROTECTED]>: > >> Hi Lindsay, >> >> Did have some difficulties as well, but got it to work using >> Xcode3.0, Apple's gcc4.2preview release and gfortran 4.2.1 from >> Simon's web site. This was on R-devel though, on a Mac Intel. >> >> Can it find the jags executable say from your home directory? Have >> you tried 'make check' in the classic-bugs/vol1 or vol2 example dirs >> (in the Terminal)? That would indeed confirm jags is running fine. >> >> For rjags, I am a bit worried about the /opt/... . Did you at some >> point install software from Fink or Darwin ports? Until I installed >> the above newer toolset, I had never been able to get rjags to work. >> >> Of course you don't really need rjags, only coda. I have also >> installed the package 'arm' and the packages arm depends on (Matrix, >> lattice, lme4, R2WinBugs). If it would help I can send you a >> 'template' dir for the line example that does not use rjags. >> >> A dependency I ran into was coda v 13.1, as of a couple of days ago >> not available as a binary package, >> but available as a source package on CRAN. >> >> Rob >> >> On Dec 30, 2007, at 8:27 AM, Lindsay Stirton wrote: >> >>> Greetings, >>> >>> I wonder if anyone can offer any help or advice--even direction to an >>> appropriate source of advice. I am trying to install rjags 1.0.1 on >>> Mac OS X >>> 10.5 (see http://www-fis.iarc.fr/~martyn/software/jags/). I have >>> R.app 2.6.1 >>> installed. >>> >>> JAGS 1.0.1 is apparently successfully installed. I (think I) know >>> this because >>> when I type 'jags' into Terminal, I get the following: >>> >>> Macintosh:Desktop ljs$ jags >>> Welcome to JAGS 1.0.1 on Thu Dec 27 20:56:09 2007 >>> JAGS is free software and comes with ABSOLUTELY NO WARRANTY >>> Loading module: basemod >>> Loading module: bugs >>> . >>> >>> However, when I try to install rjags, I get the following problem. >>> >>> Macintosh:Desktop ljs$ sudo R CMD INSTALL rjags_1.0.1-1.tar.gz >>> Password: >>> * Installing to library '/Library/Frameworks/R.framework/Resources/ >>> library' >>> * Installing *source* package 'rjags' ... >>> checking for pkg-config... /opt/local/bin/pkg-config >>> checking pkg-config is at least version 0.9.0... yes >>> checking for JAGS... configure: error: Package requirements (jags = >>> 1.0.1) were >>> not met: >>> >>> No package 'jags' found >>> >>> Consider adjusting the PKG_CONFIG_PATH environment variable if you >>> installed software in a non-standard prefix. >>> >>> ERROR: configuration failed for package 'rjags' >>> ** Removing '/Library/Frameworks/R.framework/Resources/library/rjags' >>> >>> I am really not sure what the problem is. I have (I think) set the >>> proper >>> environment variables correctly. See below: >>> >>> Macintosh:Desktop ljs$ which jags >>> /usr/local/bin/jags >>> Macintosh:Desktop ljs$ echo $PKG_CONFIG_PATH >>> /usr/local/bin >>> >>> I should say that I had many other problems >>> along the way--gfortran not originally installed properly, R CMD >>> INSTALL >>> couldn't find pkg-config. However, the above description shows the >>> problems >>> remaining even after I have done a little homework. >>> >>> Best wishes, >>> >>> Lindsay Stirton >>> >>> ______________________________________________ >>> R-help@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide >>> http://www.R-project.org/posting-guide.html >>> and provide commented, minimal, self-contained, reproducible code. >> >> > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > -- View this message in context: http://www.nabble.com/Trying-to-install-rjags-on-Mac-OS-X-10.5-tp14548607p14568732.html Sent from the R help mailing list archive at Nabble.com. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
