Hi Jim, I don't have an explicit example. But, most genome browsers have something similar and much more sophisticated than what I am looking for: e.g. http://www.ensembl.org/Homo_sapiens/contigview?seq_region_right=158821424&se q_region_name=7&click_right=490&click_left=40&seq_region_left=1&seq_region_w idth=100000&vclick.x=20&vclick.y=131 The problem I have with these representations is that they are all about ONE gene/region. I want to be able to see less information but for multiple genes. I haven't seen this for any of the data bases.
Thanks for your kind help. Bernd |-----Original Message----- |From: Jim Lemon [mailto:[EMAIL PROTECTED] |Sent: Tuesday, November 27, 2007 5:30 AM |To: Bernd Jagla |Subject: Re: [R] looking for packages that visualize nucleotide sequence |properties | |Bernd Jagla wrote: |> Hi there, |> |> I am looking for R-packages that can help me visualize properties on |> nucleotide sequences. I want to display sequences in the 1-100K base |range |> as lines and plot features above and below those lines. |> |> Any ideas would be welcome. |> |Is there an example of what you want that we could view? | |Jim ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
