Hi Everybody,
I am having a problem with loading Biobase package. I typed
2 lines below at R prompt
> source ("http://boconductor.org/biocLite.R";)
> biocLite (lib="/usr/local/lib/R/library")
which attempted to install a bunch of packages with varying
degree of success. Out of 29, 13 failed. Biobase is one of
them. As a matter of fact, when I looked at logs, most other
failures seemed due to the fact Biobase not being there. So,
why is Biobase failing to compile? Here's the complaint:
* Installing *source* package 'Biobase' ...
** libs
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include -fpic -g -O2 -c envir.c -o envir.o
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include -fpic -g -O2 -c matchpt.c -o matchpt.o
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o
gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include
-I/usr/local/include -fpic -g -O2 -c sublist_extract.c -o sublist_extract.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Biobase.so anyMissing.o envir.o
matchpt.o Rinit.o rowMedians.o sublist_extract.o
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Error : could not find function "numeric_version"
Error: unable to load R code in package 'Biobase'
Execution halted
ERROR: lazy loading failed for package 'Biobase'
** Removing '/usr/local/lib/R/library/Biobase'
It is choking at not finding a function "numeric_version". Has anybody
seen this before and have any insight to the solution? I would appreciate
a bit of helping hand.
The platform I am on is Dell 64-bit server, running redhat enterprise
server.
Regards,
Tena Sakai
[EMAIL PROTECTED]
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