On 17 April 2025 at 11:40, zhangdandan wrote: | Source: r-base | Version: 4.5.0-1 | Severity: normal | Tags: FTBFS patch | User: debian-loonga...@lists.debian.org | Usertags: loong64 | | Hi maintainers, | | Compiling the rjava 1.0-11-1 failed for loong64 in the Debian Package | Auto-Building environment. | The build error log(build error on 10 architectures) is as follows, | ``` | checking whether sigsetjmp is declared... yes | checking whether siglongjmp is declared... yes | checking Java support in R... present: | interpreter : '/usr/lib/jvm/default-java/bin/java' | archiver : '/usr/lib/jvm/default-java/bin/jar' | compiler : '/usr/lib/jvm/default-java/bin/javac' | header prep.: '' | cpp flags : '' | java libs : '' | configure: error: One or more Java configuration variables are not set. | ``` | The full log of rjava can be found at | https://buildd.debian.org/status/package.php?p=rjava&suite=sid | https://buildd.debian.org/status/fetch.php?pkg=rjava&arch=loong64&ver=1.0-11-2&stamp=1744704288&raw=0 | | After analysis, the reason is that libjvm.so is not found when compiling | rjava(depend r-base). | For loong64 or other architectures(build zero in openjdk-21), libjvm.so | was supported in /usr/lib/jvm/default-java/lib/zero/ [1][2], not | /usr/lib/jvm/default-java/lib/server/. | So we need to add "${boot_path}/zero" for OpenJDK zero build in r-base | source package.
Superb. Thank you so much. I will fold this in, and report it upstream. | Please consider the patch I attached for r-base. | I have built r-base successfully in my local ENV. | The result of my local test command `R CMD javareconf`, JNI linker flags | can be found normally for OpenJDK zero build: | ``` | # R CMD javareconf | Java interpreter : /usr/lib/jvm/default-java/bin/java | Java version : 21.0.6 | Java home path : /usr/lib/jvm/default-java | Java compiler : /usr/lib/jvm/default-java/bin/javac | Java headers gen.: | Java archive tool: /usr/lib/jvm/default-java/bin/jar | | trying to compile and link a JNI program | detected JNI cpp flags : -I$(JAVA_HOME)/include | -I$(JAVA_HOME)/include/linux | detected JNI linker flags : -L$(JAVA_HOME)/lib/zero -ljvm | ...... | JAVA_HOME : /usr/lib/jvm/default-java | Java library path: $(JAVA_HOME)/lib/zero | JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux | JNI linker flags : -L$(JAVA_HOME)/lib/zero -ljvm | Updating Java configuration in /usr/lib/R | Done. | ``` | | Based on my local r-base (r-base-core_4.5.0-1+loong64.1_loong64.deb), | rjava is built successfully. | ``` | checking whether siglongjmp is declared... yes | checking Java support in R... present: | interpreter : '/usr/lib/jvm/default-java/bin/java' | archiver : '/usr/lib/jvm/default-java/bin/jar' | compiler : '/usr/lib/jvm/default-java/bin/javac' | header prep.: '' | cpp flags : '-I/usr/lib/jvm/default-java/include | -I/usr/lib/jvm/default-java/include/linux' | java libs : '-L/usr/lib/jvm/default-java/lib/zero -ljvm' | checking whether Java run-time works... yes | ...... | dh_builddeb -O--buildsystem=R | dpkg-deb: building package 'r-cran-rjava' in | '../r-cran-rjava_1.0-11-1_loong64.deb'. | dpkg-deb: building package 'r-cran-rjava-dbgsym' in | '../r-cran-rjava-dbgsym_1.0-11-1_loong64.deb'. | dpkg-genbuildinfo -O../rjava_1.0-11-1_loong64.buildinfo | dpkg-genchanges -O../rjava_1.0-11-1_loong64.changes | ``` | | BTW, I do not find the link how to contribute patch(submit pull request) | via GITHUB to R source code upstream(https://contributor.r-project.org/). | So I submitted this patch to debian r-base source package first and Cc | upstream's r-devel@r-project.org.. Upstream uses svn and a bugzille instance at https://bugs.r-project.org/ for which one needs an account (spam :-/ ) -- I have one and will file it there and of course give you credit for it. Best, Dirk | Could you add the patch "Add "${boot_path}/zero" for OpenJDK zero build" | in the next upload? | Your opinions are welcome. | | [1]: https://github.com/openjdk/jdk/pull/5440 | [2]: https://github.com/openjdk/jdk/pull/4787 | | Thanks, | Dandan Zhang | | x[DELETED ATTACHMENT r-base-add-the-path-of-libjvm.so-for-zero-build.patch, text/x-patch] -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
