Hi, I'm encountering trouble compiling caTools_1.17.1.tar.gz and e1071_1.6-4.tar.gz on a Linux system using the Intel compiler suite. 14 other packages I generally use installed without any trouble. I notice both of these trouble packages have a C++ component, so I wonder if that might be the issue. Below, there's information on my platform, compiler, and some diagnostic output showing the errors.
Advice appreciated! Thanks, Andy Intel compiler suite: icc (ICC) 14.0.2 20140120 sessionInfo() reports: R version 3.1.3 (2015-03-09) Platform: x86_64-unknown-linux-gnu (64-bit) Running under: Red Hat Enterprise Linux Server release 6.5 (Santiago) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_3.1.3 Abbreviated versions of the output from R CMD INSTALL: For caTools: * installing to library ‘/scratch3/BMC/co2/lib/R-3.1/x86_64-unknown-linux-gnu’ * installing *source* package ‘caTools’ ... ** package ‘caTools’ successfully unpacked and MD5 sums checked ** libs icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c Gif2R.cpp -o Gif2R.o icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c GifTools.cpp -o GifTools.o icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c runfunc.c -o runfunc.o icpc -L/usr/local/lib64 -o caTools.so Gif2R.o GifTools.o runfunc.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' Gif2R.o: In function `imwritegif': /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:19: undefined reference to `R_chk_calloc' /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:23: undefined reference to `R_chk_free' ... (many more R_* undefined references) For e1071: * installing to library ‘/scratch3/BMC/co2/lib/R-3.1/x86_64-unknown-linux-gnu’ * installing *source* package ‘e1071’ ... ** package ‘e1071’ successfully unpacked and MD5 sums checked checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether icpc accepts -g... yes ** libs icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c Rsvm.c -o Rsvm.o icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c cmeans.c -o cmeans.o icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c cshell.c -o cshell.o icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c floyd.c -o floyd.o icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c svm.cpp -o svm.o icpc -L/usr/local/lib64 -o e1071.so Rsvm.o cmeans.o cshell.o floyd.o svm.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' Rsvm.o: In function `do_cross_validation': /tmp/Rtmp9h7iYE/R.INSTALL1d9615a42180e/e1071/src/Rsvm.c:91: undefined reference to `GetRNGstate' /tmp/Rtmp9h7iYE/R.INSTALL1d9615a42180e/e1071/src/Rsvm.c:94: undefined reference to `unif_rand' /tmp/Rtmp9h7iYE/R.INSTALL1d9615a42180e/e1071/src/Rsvm.c:106: undefined reference to `PutRNGstate' ... (many more undefined references) -- Andy Jacobson andy.jacob...@noaa.gov NOAA Earth System Research Lab Global Monitoring Division 325 Broadway R/GMD1 Boulder, Colorado 80305 303/578-2237 ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
