Thank you, now all works well.
G.M. Il 06/09/13 15:28, brian avants ha scritto: > Hello Everyone > > I have been following this thread because I have similar issues with > an outside-of-R package. The problem is related to dylib loading > i.e. of the form > > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object > '/Users/stnava/code/gitANTs/ANTsR/src/ANTS/ANTS-build/lib/ANTsR/libs/libRantsRegistration.so': > dlopen(/Users/stnava/code/gitANTs/ANTsR/src/ANTS/ANTS-build/lib/ANTsR/libs/libRantsRegistration.so, > > 6): Library not loaded: libitkdouble-conversion-4.5.1.dylib > Referenced from: > /Users/stnava/code/gitANTs/ANTsR/src/ANTS/ANTS-build/lib/libl_antsRegistration.dylib > Reason: image not found > > A solution that seems to work on both osx and linux is: > > export > R_LD_LIBRARY_PATH=/Users/stnava/code/gitANTs/ANTsR/src/ANTS/ANTS-build/lib/ > > but I would really like to avoid this, if possible. I tried using > .libPaths ( suspecting it would not work ) and I got the same error as > above ... > > as an aside, there seems very little documentation for > R_LD_LIBRARY_PATH & I don't recall how I came across it ... i have > some other notes here: > > https://github.com/stnava/ANTsR/blob/master/configure > > any thoughts appreciated , at your leisure ... > > & thanks, as usual, > > > > brian > > > > > On Thu, Sep 5, 2013 at 4:38 PM, Prof Brian Ripley > <rip...@stats.ox.ac.uk <mailto:rip...@stats.ox.ac.uk>> wrote: > > On 05/09/2013 21:28, gianluca.mastranto...@yahoo.it > <mailto:gianluca.mastranto...@yahoo.it> wrote: > > just for completion > > i need to use > library(Model, lib.loc="user/area/myRLib") > because if i use > library(Model) > i get this message > Error in library("BayesWrap") : there is no package called > 'BayesWrap' > > > For the record: not if you follow my suggestion. > > See ?.libPaths for why. > > > > > > Il 05/09/13 11:59, gianluca.mastranto...@yahoo.it > <mailto:gianluca.mastranto...@yahoo.it> ha scritto: > > First of all, thanks for your help. > > I did all the things you told me. I was able to load the > library, but > then > > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object > '/lustre/work/gjona2/Wrap/BayesWrap/libs/BayesWrap.so': > libR.so: cannot open shared object file: No such file or > directory > In addition: Warning message: > package 'BayesWrap' was built under R version 2.15.2 > Error: package/namespace load failed for 'BayesWrap' > Execution halted > > what does it means? > > G.M. > > Il 04/09/13 22:42, Prof Brian Ripley ha scritto: > > On 04/09/2013 19:58, Geoff Jentry wrote: > > Can you add some details? > Suppose i have the package Model.tar.gz and my > writable are is in > user/area, what i have to do next to install > the package? > > > What I was picturing was something like this > (forgive me if syntax > isn't > 100%): > > mkdir user/area/myRLib > R CMD INSTALL --library=user/area/myRLib Model.tar.gz > > and then in R: > library(Model, lib.loc="user/area/myRLib") > > Note though Brian Ripley's response to me where he > indicates that this > is handled automatically. > > > Yes, install.packages("Model.tar.gz") should suffice. > > > -J > > ______________________________________________ > R-devel@r-project.org > <mailto:R-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > > > > > > > -- > Brian D. Ripley, rip...@stats.ox.ac.uk <mailto:rip...@stats.ox.ac.uk> > Professor of Applied Statistics, > http://www.stats.ox.ac.uk/~ripley/ > <http://www.stats.ox.ac.uk/%7Eripley/> > University of Oxford, Tel: +44 1865 272861 > <tel:%2B44%201865%20272861> (self) > 1 South Parks Road, +44 1865 272866 <tel:%2B44%201865%20272866> (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 > <tel:%2B44%201865%20272595> > > ______________________________________________ > R-devel@r-project.org <mailto:R-devel@r-project.org> mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > > [[alternative HTML version deleted]] ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
