I am developing a package for analysis of seismic data that relies on a Fortran library.
Package compilation works fine on Ubuntu and Red Hat Enterprise but fails for R 2.15.3 on Mac OSX 10.8.4. I've included the entire dump below but the relevant error message seems to be: ld: warning: ignoring file libmseed/libmseed.a, file was built for archive > which is not the architecture being linked (i386): libmseed/libmseed.a Compilation for x86_64 proceeds without a hitch. If anyone is curious, the package tarballs are available at: http://mazamascience.com/Downloads/ Thanks for any helpful suggestions about compiling Fortran on OSX. Jon $ R CMD INSTALL seismic_0.2.1.0.tar.gz * installing to library /Library/Frameworks/R.framework/Versions/2.15/Resources/library * installing *source* package seismic ... ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -Ilibmseed -I/usr/local/include -fPIC -fPIC -g -O2 -c parseMiniSEED.c -o parseMiniSEED.o gcc -O2 -Wall -fPIC -c -o fileutils.o fileutils.c gcc -O2 -Wall -fPIC -c -o genutils.o genutils.c gcc -O2 -Wall -fPIC -c -o gswap.o gswap.c gcc -O2 -Wall -fPIC -c -o lmplatform.o lmplatform.c gcc -O2 -Wall -fPIC -c -o lookup.o lookup.c gcc -O2 -Wall -fPIC -c -o msrutils.o msrutils.c gcc -O2 -Wall -fPIC -c -o pack.o pack.c gcc -O2 -Wall -fPIC -c -o packdata.o packdata.c gcc -O2 -Wall -fPIC -c -o traceutils.o traceutils.c gcc -O2 -Wall -fPIC -c -o tracelist.o tracelist.c gcc -O2 -Wall -fPIC -c -o parseutils.o parseutils.c gcc -O2 -Wall -fPIC -c -o unpack.o unpack.c gcc -O2 -Wall -fPIC -c -o unpackdata.o unpackdata.c gcc -O2 -Wall -fPIC -c -o selection.o selection.c gcc -O2 -Wall -fPIC -c -o logging.o logging.c rm -f libmseed.a ar -csq libmseed.a fileutils.o genutils.o gswap.o lmplatform.o lookup.o msrutils.o pack.o packdata.o traceutils.o tracelist.o parseutils.o unpack.o unpackdata.o selection.o logging.o gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o seismic.so parseMiniSEED.o -Llibmseed -lmseed -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: ignoring file libmseed/libmseed.a, file was built for archive which is not the architecture being linked (i386): libmseed/libmseed.a installing to /Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic/libs/i386 *** arch - x86_64 gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -Ilibmseed -I/usr/local/include -fPIC -fPIC -g -O2 -c parseMiniSEED.c -o parseMiniSEED.o gcc -O2 -Wall -fPIC -c -o fileutils.o fileutils.c gcc -O2 -Wall -fPIC -c -o genutils.o genutils.c gcc -O2 -Wall -fPIC -c -o gswap.o gswap.c gcc -O2 -Wall -fPIC -c -o lmplatform.o lmplatform.c gcc -O2 -Wall -fPIC -c -o lookup.o lookup.c gcc -O2 -Wall -fPIC -c -o msrutils.o msrutils.c gcc -O2 -Wall -fPIC -c -o pack.o pack.c gcc -O2 -Wall -fPIC -c -o packdata.o packdata.c gcc -O2 -Wall -fPIC -c -o traceutils.o traceutils.c gcc -O2 -Wall -fPIC -c -o tracelist.o tracelist.c gcc -O2 -Wall -fPIC -c -o parseutils.o parseutils.c gcc -O2 -Wall -fPIC -c -o unpack.o unpack.c gcc -O2 -Wall -fPIC -c -o unpackdata.o unpackdata.c gcc -O2 -Wall -fPIC -c -o selection.o selection.c gcc -O2 -Wall -fPIC -c -o logging.o logging.c rm -f libmseed.a ar -csq libmseed.a fileutils.o genutils.o gswap.o lmplatform.o lookup.o msrutils.o pack.o packdata.o traceutils.o tracelist.o parseutils.o unpack.o unpackdata.o selection.o logging.o gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o seismic.so parseMiniSEED.o -Llibmseed -lmseed -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic/libs/x86_64 ** R ** inst ** preparing package for lazy loading Creating a generic function for as.vector from package base in package seismic Creating a generic function for mean from package base in package seismic Creating a generic function for median from package stats in package seismic Creating a generic function for sd from package stats in package seismic Creating a generic function for plot from package graphics in package seismic ** help *** installing help indices ** building package indices ** installing vignettes seismic-intro.Rnw ** testing if installed package can be loaded *** arch - i386 Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic/libs/i386/seismic.so': dlopen(/Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic/libs/i386/seismic.so, 6): Symbol not found: _ms_loginit Referenced from: /Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic/libs/i386/seismic.so Expected in: flat namespace in /Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic/libs/i386/seismic.so Error: loading failed Execution halted *** arch - x86_64 ERROR: loading failed for i386 * removing /Library/Frameworks/R.framework/Versions/2.15/Resources/library/seismic -- Jonathan Callahan, PhD Mazama Science 206-708-5028 mazamascience.com [[alternative HTML version deleted]]
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