Hi,
I have IRanges 1.13.8 installed:
> sessionInfo()
R Under development (unstable) (2011-11-21 r57721)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] IRanges_1.13.8 BiocGenerics_0.1.3
And, surprisingly, I have no problem installing a package that
requires IRanges >= 1.13.9 (thru the Imports field):
hpages@rhino1:~/HTSeqGenie/svn> grep IRanges RNASeqGenie/DESCRIPTION
Imports: BiocGenerics (>= 0.1.3), IRanges (>= 1.13.9),
hpages@rhino1:~/HTSeqGenie/svn> R-2.15 CMD INSTALL RNASeqGenie
* installing to library ‘/home/hpages/R-2.15/library’
* installing *source* package ‘RNASeqGenie’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘RNASeqGenie.Rnw’
** testing if installed package can be loaded
* DONE (RNASeqGenie)
Thanks!
H.
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fhcrc.org
Phone: (206) 667-5791
Fax: (206) 667-1319
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