Hello David On 29.06.2011, at 15:56, David Winsemius wrote:
> On Jun 29, 2011, at 5:33 AM, soeren.vo...@uzh.ch wrote: > >> Hello, the compilation of the GUTS package on CRAN for Mac produces the >> following error messages: >> >> http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/GUTS-00install.html >> >> I guess it is some namespace collision, but I can not reproduce it on my >> machine, it compiles fine here. What is the cause and which setup do I need >> to reproduce the errors? > > I was going to suggest you take this up with the maintainers... but you _are_ > one of the maintainers. :-) > Here is the output from an attempt to compile from source, version 0.1.45, > with a relatively recent version of R 2.13.0 (but not the most recent and I > still use Mac OSX 10.5.8). Perhaps its brevity will be helpful, and the fact > that it seems to identify different error than those flagged in the log at > CRAN. Thanks for your answer. The failure on your side is clear to me: there is no installation of the boost C++ library in any of the standard include locations. I have added /opt/local/include in Makevars (Mac Ports installation of C source packages), however, I know I should but still I am reluctant to write a configure script that could circumvent non-standard installations of boost on UNIX machines. So thanks for the output, but the CRAN messages must point to something different... Regards Sören > trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/GUTS_0.1.45.tar.gz' > Content type 'application/x-gzip' length 9842 bytes > opened URL > ================================================== > downloaded 9842 bytes > > Loading required package: lattice > Loading required package: sos > Loading required package: brew > [1] "2011-06-29 09:40:18 EDT" > * installing *source* package ‘GUTS’ ... > ** libs > *** arch - i386 > g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include > -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include > -I/usr/local/include > -I"/Library/Frameworks/R.framework/Versions/2.13/Resources/library/Rcpp/include" > -fPIC -g -O2 -c GUTS.cpp -o GUTS.o > In file included from GUTS.cpp:12: > GUTS.h:21:28: error: boost/random.hpp: No such file or directory > GUTS.h:22:40: error: boost/math/distributions.hpp: No such file or directory > GUTS.cpp: In function ‘void to_print(double)’: > GUTS.cpp:277: error: ‘cout’ was not declared in this scope > GUTS.cpp: In member function ‘void GUTS::showObject()’: > GUTS.cpp:281: error: ‘cout’ is not a member of ‘std’ > GUTS.cpp:284: error: ‘cout’ was not declared in this scope > make: *** [GUTS.o] Error 1 > ERROR: compilation failed for package ‘GUTS’ > * removing > ‘/Library/Frameworks/R.framework/Versions/2.13/Resources/library/GUTS’ > > > sessionInfo() > R version 2.13.0 beta (2011-04-04 r55296) > Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) > > locale: > [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8 > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > other attached packages: > [1] mgcv_1.7-6 sos_1.3-0 brew_1.0-6 lattice_0.19-26 > > loaded via a namespace (and not attached): > [1] grid_2.13.0 Matrix_0.999375-50 nlme_3.1-101 tools_2.13.0 > > -- > David. > > >> >> R: version >> platform i386-apple-darwin9.8.0 >> arch i386 >> os darwin9.8.0 >> system i386, darwin9.8.0 >> status >> major 2 >> minor 13.0 >> year 2011 >> month 04 >> day 13 >> svn rev 55427 >> language R >> version.string R version 2.13.0 (2011-04-13) >> >> I ~ $: gcc --version >> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5666) (dot 3) >> Copyright (C) 2007 Free Software Foundation, Inc. >> This is free software; see the source for copying conditions. There is NO >> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. >> >> I ~ $: less /opt/local/include/boost/version.hpp >> // Boost version.hpp configuration header file >> ------------------------------// >> [...] >> #define BOOST_VERSION 104601 >> #define BOOST_LIB_VERSION "1_46_1" >> [...] >> >> ______________________________________________ >> R-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-devel > > David Winsemius, MD > West Hartford, CT > > ______________________________________________ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
