Hi,
I experienced a problem with the package Geneland under R 2.6.0
with windows XP professional.
The commands below should simulate a dataset,
then make an MCMC simulation stored in tempdir().
It works with R 2.5.1 (both GUI and command line)
It works with the command line of R 2.6.0
but not with the R GUI of 2.6.0: no output file is created in tempdir()
and R remains frozen.
I reported it as a bug
(PR#9964) but did not get any feed back.
Thanks in advance for any help.
Gilles
set.seed(1)
data <- simdata(nindiv=200,
coord.lim=c(0,1,0,1) ,
number.nuclei=5 ,
allele.numbers=rep(10,20),
IBD=FALSE,
npop=2,
give.tess.grid=FALSE)
path.mcmc <- paste(tempdir(),"/",sep="")
mcmcFmodel(coordinates= t(data$coord.indiv),
genotypes=data$genotypes,
path.mcmc=path.mcmc,
rate.max=10,
delta.coord=0,
npopmin=1,
npopinit=5,
npopmax=5,
nb.nuclei.max=50,
nit=500,
thinning=1,
freq.model="Dirichlet",
varnpop=FALSE,
spatial=TRUE)
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