I am not able to compile R-devel 2006-11-28 under FreeBSD-7.0 CURRENT.
After running ./configure script 'make' stops with the following error
message:
--------------------------
#make
gcc -I. -I./src/include -I./src/include -I/usr/local/include
-DHAVE_CONFIG_H -g -O2 -c -o .m.o
gcc: No input files specified
*** Error code 1
Stop in /usr/local/R-devel.
#
--------------------------
I attached configure messages. If wanted I can send complete config.log
(460 kByte).
Are their any ideas about what is going wrong? If I could help with more
information or with testing, please let me know.
Thanks,
Rainer Hurling
#./configure
checking build system type... i386-unknown-freebsd7.0
checking host system type... i386-unknown-freebsd7.0
loading site script './config.site'
loading build specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... no
checking for mawk... no
checking for nawk... nawk
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for bison... bison -y
checking for ar... ar
checking for a BSD-compatible install... /usr/local/bin/ginstall -c
checking for sed... /usr/bin/sed
checking for less... /usr/bin/less
checking for perl... /usr/local/bin/perl
checking whether perl version is at least 5.004... yes
checking for dvips... /usr/local/bin/dvips
checking for tex... /usr/local/bin/tex
checking for latex... /usr/local/bin/latex
checking for makeindex... /usr/local/bin/makeindex
checking for pdftex... /usr/local/bin/pdftex
checking for pdflatex... /usr/local/bin/pdflatex
checking for makeinfo... /usr/local/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for unzip... /usr/local/bin/unzip
checking for zip... /usr/local/bin/zip
checking for gzip... /usr/bin/gzip
checking for firefox... /usr/local/bin/firefox
using default browser ... /usr/local/bin/firefox
checking for acroread... /usr/X11R6/bin/acroread
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking whether gcc needs -traditional... no
checking how to run the C preprocessor... gcc -E
checking for g77... no
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for gfortran... no
checking for ftn... no
checking for g95... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for g77... no
checking for f77... f77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether f77 accepts -g... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... no
checking whether f77 accepts -fvisibility... no
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... yes
checking whether gcc accepts -g... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 65536
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ranlib... (cached) ranlib
checking for strip... strip
checking if gcc static flag works... yes
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... yes
checking dynamic linker characteristics... freebsd7.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd7.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for f77 option to produce PIC... -fPIC
checking if f77 PIC flag -fPIC works... yes
checking if f77 supports -c -o file.o... yes
checking whether the f77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd7.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... no
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... yes
checking floatingpoint.h presence... yes
checking for floatingpoint.h... yes
checking fpu_control.h usability... no
checking fpu_control.h presence... no
checking for fpu_control.h... no
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking ieee754.h usability... no
checking ieee754.h presence... no
checking for ieee754.h... no
checking ieeefp.h usability... yes
checking ieeefp.h presence... yes
checking for ieeefp.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... no
checking return type of signal handlers... void
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc option to accept ISO C99... -std=gnu99
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached)
-std=gnu99
checking for inline... inline
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
checking for long long... yes
checking size of long long... 8
checking for double... yes
checking size of double... 8
checking for long double... yes
checking size of long double... 12
checking whether we can compute C Make dependencies... yes, using gcc
-std=gnu99 -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking how to get verbose linking output from f77... -v
checking for Fortran 77 libraries of f77... -L/usr/local/lib -L/usr/lib -lg2c
-lm
checking how to get verbose linking output from gcc -std=gnu99... -v
checking for C libraries of gcc -std=gnu99... -L/usr/local/lib -L/usr/lib
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, extra
underscore
checking whether f77 appends underscores to external names... yes
checking whether f77 appends extra underscores to external names... yes
checking whether mixed C/Fortran code can be run... yes
checking whether f77 and gcc -std=gnu99 agree on int and double... yes
checking whether f77 and gcc -std=gnu99 agree on double complex... yes
checking whether g++ accepts -M for generating dependencies... yes
checking whether C runtime needs -D__NO_MATH_INLINES... yes
checking for xmkmf... /usr/X11R6/bin/xmkmf
checking for off_t... yes
checking for working alloca.h... no
checking for alloca... yes
checking whether alloca is declared... no
checking for fseeko... yes
checking for ftello... yes
checking for isblank... yes
checking for matherr... no
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log2 exists and is declared... no
checking whether log10 exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking whether __va_copy exists and is declared... no
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether system exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether strcoll exists and is declared... yes
checking whether strerror exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether times exists and is declared... yes
checking whether time exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking for finite... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking for nl_langinfo and CODESET... yes
checking for acosh... yes
checking for asinh... yes
checking for atanh... yes
checking for mkdtemp... yes
checking for snprintf... yes
checking for strdup... yes
checking for strncasecmp... yes
checking for vsnprintf... yes
checking whether acosh is declared... yes
checking whether asinh is declared... yes
checking whether atanh is declared... yes
checking whether mkdtemp is declared... yes
checking whether snprintf is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking whether vsnprintf is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working finite... yes
checking for working isfinite... yes
checking for working log... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking whether C99 double complex is supported...
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether cexp exists and is declared... no
checking whether clog exists and is declared... no
checking whether csqrt exists and is declared... no
checking whether cpow exists and is declared... no
checking whether ccos exists and is declared... no
checking whether csin exists and is declared... no
checking whether ctan exists and is declared... no
checking whether cacos exists and is declared... no
checking whether casin exists and is declared... no
checking whether catan exists and is declared... no
checking whether ccosh exists and is declared... no
checking whether csinh exists and is declared... no
checking whether ctanh exists and is declared... no
checking whether cacosh exists and is declared... no
checking whether casinh exists and is declared... no
checking whether catanh exists and is declared... no
no
checking for cblas_cdotu_sub in vecLib framework... no
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... in libiconv
checking whether iconv() accepts "UTF-8", "latin1" and "UCS-*"... yes
checking for iconvlist... yes
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for X... libraries /usr/X11R6/lib, headers /usr/X11R6/include
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... no
configure: WARNING: X11/Intrinsic.h: accepted by the compiler, rejected by the
preprocessor!
configure: WARNING: X11/Intrinsic.h: proceeding with the compiler's result
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... yes
checking X11/Xmu/Atoms.h presence... no
configure: WARNING: X11/Xmu/Atoms.h: accepted by the compiler, rejected by the
preprocessor!
configure: WARNING: X11/Xmu/Atoms.h: proceeding with the compiler's result
checking for X11/Xmu/Atoms.h... yes
checking for XmuInternAtom in -lXmu... yes
checking for CFStringGetSystemEncoding in CoreFoundation framework... no
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories...
/usr/local/lib/tcl8.4/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories...
/usr/local/lib/tk8.4/tkConfig.sh
checking /usr/local/include/tcl8.4/generic/tcl.h usability... yes
checking /usr/local/include/tcl8.4/generic/tcl.h presence... yes
checking for /usr/local/include/tcl8.4/generic/tcl.h... yes
checking /usr/local/include/tk8.4/generic/tk.h usability... yes
checking /usr/local/include/tk8.4/generic/tk.h presence... yes
checking for /usr/local/include/tk8.4/generic/tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.0.5... yes
checking for png_create_write_struct in -lpng... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking whether zlib support needs to be compiled... yes
checking mmap support for zlib... yes
checking whether bzip2 support needs to be compiled... yes
checking whether PCRE support needs to be compiled... yes
checking whether leap seconds are treated according to POSIX... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGE_FILES value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for fseeko... (cached) yes
checking whether KERN_USRSTACK sysctl is supported... yes
checking for lpr... lpr
checking for paperconf... /usr/local/bin/paperconf
checking for java... /usr/local/bin/java
checking for javac... /usr/local/bin/javac
checking for javah... /usr/local/bin/javah
checking for jar... /usr/local/bin/jar
checking whether Java compiler works... yes
checking whether Java interpreter works... yes
checking for Java environment... in /usr/local/diablo-jdk1.5.0/jre
checking for gfortran... no
checking for g95... no
checking for f95... no
checking for fort... no
checking for xlf95... no
checking for ifort... no
checking for ifc... no
checking for efc... no
checking for pgf95... no
checking for lf95... no
checking for ftn... no
checking for f90... no
checking for xlf90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for g77... no
checking for f77... f77
checking whether we are using the GNU Fortran compiler... yes
checking whether f77 accepts -g... yes
checking for Fortran flag to compile .f90 files... unknown
checking for Fortran flag to compile .f95 files... unknown
checking for recommended packages... yes
checking whether NLS is requested... yes
checking whether make sets $(MAKE)... yes
checking for msgfmt... /usr/local/bin/msgfmt
checking for gmsgfmt... /usr/local/bin/msgfmt
checking for xgettext... /usr/local/bin/xgettext
checking for msgmerge... /usr/local/bin/msgmerge
checking whether we are using the GNU C Library 2 or newer... no
checking for library containing strerror... none required
checking for signed... yes
checking for inline... inline
checking for off_t... (cached) yes
checking for long long... (cached) yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether we are using the GNU C Library 2.1 or newer... no
checking whether integer division by zero raises SIGFPE... yes
checking for unsigned long long... yes
checking for inttypes.h... yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ld used by GCC... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking for ptrdiff_t... yes
checking argz.h usability... no
checking argz.h presence... no
checking for argz.h... no
checking for limits.h... (cached) yes
checking for locale.h... (cached) yes
checking nl_types.h usability... yes
checking nl_types.h presence... yes
checking for nl_types.h... yes
checking malloc.h usability... no
checking malloc.h presence... no
checking for malloc.h... no
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... no
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config.status: creating tests/Native/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing stamp-h commands
R is now configured for i386-unknown-freebsd7.0
Source directory: .
Installation directory: /usr/local
C compiler: gcc -std=gnu99 -D__NO_MATH_INLINES -g -O2
Fortran 77 compiler: f77 -g -O2
C++ compiler: g++ -g -O2
Fortran 90/95 compiler: f77 -g -O2
Obj-C compiler: gcc -g -O2
Interfaces supported: X11, tcltk
External libraries: readline
Additional capabilities: PNG, JPEG, iconv, MBCS, NLS
Options enabled: shared BLAS, R profiling, Java
Recommended packages: yes
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