Sean Davis <[EMAIL PROTECTED]> writes:
> Why am I seeing the following in R-devel (sept 2, 2006 build) on opensuse
> 10.1? I'm sure it is something simple I am missing, but I just don't see it
> (output below).
>
> Thanks,
> Sean
>
>
> > readLines(url("http://www.bioconductor.org/biocLite.R";))
> [1] "source(\"http://bioconductor.org/getBioC.R\";)"
> [2] ""
> [3] "biocLite <- function(pkgs, groupName=\"lite\", ...)"
> [4] "{"
> [5] " if (missing(pkgs))"
> [6] " getBioC(groupName=groupName, ...)"
> [7] " else"
> [8] " getBioC(pkgs=pkgs, groupName=groupName, ...)"
> [9] "}"
> > source(url("http://www.bioconductor.org/biocLite.R";))
> Error in file(file, "r", encoding = encoding) :
> unable to open connection
> In addition: Warning message:
> cannot open: HTTP status was '404 Not Found'
> > sessionInfo()
> R version 2.4.0 Under development (unstable) (2006-09-02 r39068)
> x86_64-unknown-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] "methods" "stats" "graphics" "grDevices" "utils" "datasets"
> [7] "base"
> >
Hmm, something is up. I got
> source(url("http://www.bioconductor.org/biocLite.R";))
Error in file(file, "r", encoding = encoding) :
unable to open connection
In addition: Warning message:
cannot open: HTTP status was '404 Not Found'
> source(url("http://www.bioconductor.org/biocLite.R";))
*** caught segfault ***
address 0x21, cause 'memory not mapped'
Traceback:
1: file(file, "r", encoding = encoding)
2: source("http://bioconductor.org/getBioC.R";)
3: eval.with.vis(expr, envir, enclos)
4: eval.with.vis(ei, envir)
5: source(url("http://www.bioconductor.org/biocLite.R";))
Possible actions:
1: abort (with core dump)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection:
Oops...
The immediate cause would seem to be that
http://bioconductor.org/getBioC.R is non-existent (needs to be
www.bioconductor.org).
That's a server-side issue, not an R problem, but what was that bit
with the segfault? I can't seem to reproduce it in a fresh session.
--
O__ ---- Peter Dalgaard Øster Farimagsgade 5, Entr.B
c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
~~~~~~~~~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907
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