I’ll try to completely remove QGIS, and delete ~/.qgis,  ~/.qgis2 and ~/.grass* 
folders, do a fresh install and see what happens.


-----
Julian Bogdani
[email protected]
http://bradypus.net





On 7 Nov 2013, at 16:15 , William Kyngesburye <[email protected]> wrote:

> I updated Processing, no missing dependency errors after restarting QGIS.
> 
> A couple things to check: turn on the "Keep dialog open after running 
> algorithm" general option, you can then see more details of the problem in 
> the log window after closing the error dialog.  The missing dependency error 
> may be misleading.
> 
> Also make sure to uncheck the SAGA 2.0.8 compatibility option 
> (providers/SAGA).  Victor: maybe the default should detect the system and 
> uncheck it automatically for OS X?
> 
> So, I don't get missing dependency error, I do get this for kriging in the 
> log:
> 
> Unknown option 'USER_FIT'
> 
> On Nov 7, 2013, at 4:51 AM, Julian Bogdani wrote:
> 
>> Hi Victor,
>> SAGA should be installed with QGIS, isn’t it? I can see the saga_cmd in 
>> /Applications/QGIS.app/Contents/MacOS/bin and I added this path to my 
>> .bash_profile file 
>> Running saga_cmd -v on my terminal I have: SAGA Version: 2.1.0
>> 
>> Closing QGIS and restarting, I found no changes, still the same error when I 
>> try to run any SAGA algorithm: Missing dependency
>> 
>> Should I install Saga separately?
>> 
>> 
>> 
>> 
>> 
>> 
>> On 7 Nov 2013, at 11:37 , Victor Olaya <[email protected]> wrote:
>> 
>>> Is SAGA installed and in PATH? can you open a console and run
>>> saga_cmd? what do you get?
>>> 
>>> Notice that SAGA 2.1.0 is needed in mac, but the default Processing
>>> configuration is to have 2.0.8 compatibility enabled...
>>> 
>>> 2013/11/7 Julian Bogdani <[email protected]>:
>>>> Trying to run any SAGA algorithm I get this message now:
>>>> 
>>>> Missing dependency.This algorithm cannot be run :-(
>>>> 
>>>> This algorithm requires SAGA to be run.Unfortunately, it seems that SAGA is
>>>> not installed in your system, or it is not correctly configured to be used
>>>> from QGIS
>>>> 
>>>> Click here to know more about how to install and configure SAGA to be used
>>>> with QGIS
>>>> 
>>>> I just reinstalled GDAL and QGIS, upgraded Processing, and checked that 
>>>> SAGA
>>>> was activated (Processing > Options and Configurations > Providers > SAGA)
>>>> 
>>>> 
>>>> 
>>>> 
>>>> -----
>>>> Julian Bogdani
>>>> [email protected]
>>>> http://bradypus.net
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> On 7 Nov 2013, at 11:23 , G. Allegri <[email protected]> wrote:
>>>> 
>>>> I've noticed that it happens with Windows standalone installer too but not
>>>> with OSGeo4W.
>>>> 
>>>> giovanni
>>>> 
>>>> 
>>>> 2013/11/7 Werner Macho <[email protected]>
>>>>> 
>>>>> Hi!
>>>>> 
>>>>> I had the same error .. It is nothing serious .. it tells you more or
>>>>> less that the upgrade was successful .. (because it does not find old
>>>>> files)
>>>>> just close and reopen QGIS and everything will be fine ..
>>>>> 
>>>>> regards
>>>>> Werner
>>>>> 
>>>>> On Thu, Nov 7, 2013 at 12:16 PM, Julian Bogdani <[email protected]>
>>>>> wrote:
>>>>>> Hello all,
>>>>>> I’m running latest QGIS (2.0.1-3) installed from Kyngchaos repo, on
>>>>>> MacOS X
>>>>>> 10.9 (Mavericks)
>>>>>> trying to upgrade Processing plugin, to get advantage of this fix: Bug
>>>>>> #8877: Kriging from SAGA (Processing) fails to run I get the following
>>>>>> error.
>>>>>> Any hint? Thank you
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> Couldn't load plugin 'processing' from
>>>>>> 
>>>>>> ['/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing',
>>>>>> '/Applications/QGIS.app/Contents/MacOS/../Resources/python',
>>>>>> '/Users/jbogdani/.qgis2/python',
>>>>>> '/Users/jbogdani/.qgis2/python/plugins',
>>>>>> '/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins',
>>>>>> '/Library/Frameworks/SQLite3.framework/Versions/B/Python/2.7',
>>>>>> '/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7',
>>>>>> '/Library/Python/2.7/site-packages/numpy-override',
>>>>>> 
>>>>>> '/Library/Frameworks/GDAL.framework/Versions/1.10/Python/2.7/site-packages',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python27.zip',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-darwin',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac/lib-scriptpackages',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-old',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/PyObjC',
>>>>>> '/Library/Python/2.7/site-packages',
>>>>>> '/Applications/QGIS.app/Contents/Resources/python/plugins/fTools/tools']
>>>>>> 
>>>>>> Traceback (most recent call last):
>>>>>> File
>>>>>> 
>>>>>> "/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py",
>>>>>> line 182, in loadPlugin
>>>>>>   __import__(packageName)
>>>>>> File
>>>>>> 
>>>>>> "/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py",
>>>>>> line 453, in _import
>>>>>>   mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>> File "/Users/jbogdani/.qgis2/python/plugins/processing/__init__.py",
>>>>>> line
>>>>>> 29, in
>>>>>>   from processing.tools.general import *
>>>>>> File
>>>>>> 
>>>>>> "/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py",
>>>>>> line 453, in _import
>>>>>>   mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>> File
>>>>>> "/Users/jbogdani/.qgis2/python/plugins/processing/tools/general.py",
>>>>>> line 29, in
>>>>>>   from processing.core.Processing import Processing
>>>>>> File
>>>>>> 
>>>>>> "/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py",
>>>>>> line 453, in _import
>>>>>>   mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>> File
>>>>>> 
>>>>>> "/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing/core/Processing.py",
>>>>>> line 35, in
>>>>>>   from processing.gui.AlgorithmExecutor import AlgorithmExecutor
>>>>>> File
>>>>>> 
>>>>>> "/Applications/QGIS.app/Contents/MacOS/../Resources/python/qgis/utils.py",
>>>>>> line 453, in _import
>>>>>>   mod = _builtin_import(name, globals, locals, fromlist, level)
>>>>>> ImportError: No module named AlgorithmExecutor
>>>>>> 
>>>>>> Python version:
>>>>>> 2.7.5 (default, Aug 25 2013, 00:04:04)
>>>>>> [GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.0.68)]
>>>>>> 
>>>>>> 
>>>>>> QGIS version:
>>>>>> 2.0.1-Dufour Dufour, f738351
>>>>>> 
>>>>>> Python path:
>>>>>> 
>>>>>> ['/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins/processing',
>>>>>> '/Applications/QGIS.app/Contents/MacOS/../Resources/python',
>>>>>> '/Users/jbogdani/.qgis2/python',
>>>>>> '/Users/jbogdani/.qgis2/python/plugins',
>>>>>> '/Applications/QGIS.app/Contents/MacOS/../Resources/python/plugins',
>>>>>> '/Library/Frameworks/SQLite3.framework/Versions/B/Python/2.7',
>>>>>> '/Library/Frameworks/GEOS.framework/Versions/3/Python/2.7',
>>>>>> '/Library/Python/2.7/site-packages/numpy-override',
>>>>>> 
>>>>>> '/Library/Frameworks/GDAL.framework/Versions/1.10/Python/2.7/site-packages',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python27.zip',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-darwin',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/plat-mac/lib-scriptpackages',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-tk',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-old',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/lib-dynload',
>>>>>> 
>>>>>> '/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/PyObjC',
>>>>>> '/Library/Python/2.7/site-packages',
>>>>>> '/Applications/QGIS.app/Contents/Resources/python/plugins/fTools/tools']
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> -----
>>>>>> Julian Bogdani
>>>>>> [email protected]
>>>>>> http://bradypus.net
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> _______________________________________________
>>>>>> Qgis-user mailing list
>>>>>> [email protected]
>>>>>> http://lists.osgeo.org/mailman/listinfo/qgis-user
>>>>> _______________________________________________
>>>>> Qgis-user mailing list
>>>>> [email protected]
>>>>> http://lists.osgeo.org/mailman/listinfo/qgis-user
>>>> 
>>>> 
>>>> 
>>>> 
>>>> --
>>>> Giovanni Allegri
>>>> http://about.me/giovanniallegri
>>>> blog: http://blog.spaziogis.it
>>>> GEO+ geomatica in Italia http://bit.ly/GEOplus
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Qgis-user mailing list
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>>>> http://lists.osgeo.org/mailman/listinfo/qgis-user
>> 
>> _______________________________________________
>> Qgis-user mailing list
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> 
> -----
> William Kyngesburye <kyngchaos*at*kyngchaos*dot*com>
> http://www.kyngchaos.com/
> 
> "History is an illusion caused by the passage of time, and time is an 
> illusion caused by the passage of history."
> 
> - Hitchhiker's Guide to the Galaxy
> 
> 

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