With a single band raster map (eg. topographical black/white map) if there is a collar (eg. white border) around the raster, using gdalbuilvrt (and BuildVRT plugin) the result is a vrt file where the map have white strips in overlap area [1]. In this case making little modification in the vrt text file you can obtain a nice result [2]. What is important is to set the NODATA value in vrt for each raster and replace SimpleSource with ComplexSource. I don't remember where I find this trick (mailing list?) and I'm not a gdal guru (vrt specification in gdal web site [3]).

When created the vrt file (via command-line or the very useful new plugin) I run: sed -e 's/<SimpleSource>/<ComplexSource>/g' -e 's/<\/SimpleSource>/ <NODATA>0<\/NODATA>\n <\/ComplexSource>/g' file_created.vrt

and now all is ok.
Note that the trasparency of the final map must be set in qgis in the usual manner.

Maybe this can be add to the plugin (an otpion to select NODATA value)?
Hope this can help (and sorry for the bad english...).

Regards,
giovanni


[1] http://www.iouppo.com/lite/pics/de0b44236bd2b2398de0e3172269f81b.png
[2] http://www.iouppo.com/lite/pics/5d9e1e816caea9c33f1f62595bffaa59.png
[3] http://www.gdal.org/gdal_vrttut.html
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