safiq...@gmail.com writes: > Deal all, > Could you please help me how can I avoid this problem > my Jupyter Notebook code was > help pls > > > > # init a treemix analysis object with some param arguments > tmx = ipa.treemix( > data=data, > imap=imap, > minmap=minmap, > seed=123456, > root="Petronia_petronia", > m=2, > ) > > error > > NameError Traceback (most recent call last) > <ipython-input-8-d80ffd5719d7> in <module> > 6 seed=123456, > 7 root="Petronia_petronia", > ----> 8 m=2, > 9 ) > > ~/opt/miniconda3/envs/py3/lib/python3.6/site-packages/ipyrad/analysis/treemix.py > in __init__(self, data, name, workdir, imap, minmap, seed, quiet, > raise_root_error, binary, *args, **kwargs) > 118 > 119 # others > --> 120 self.binary = os.path.join(sys.prefix, "bin", "treemix") > 121 self.binary = (binary if binary else self.binary) > 122 self.raise_root_error = raise_root_error > > NameError: name 'sys' is not defined
As the name sys is used in the imported module, that module has to import sys. Importing it in the calling code doesn't help. So I would say this is a bug in the module. You should report the bug to its author. In the meantime you can correct your own copy at ~/opt/miniconda3/envs/py3/lib/python3.6/site-packages/ipyrad/analysis/treemix.py by adding import sys for example around line 10 -- Pieter van Oostrum www: http://pieter.vanoostrum.org/ PGP key: [8DAE142BE17999C4] -- https://mail.python.org/mailman/listinfo/python-list
