[EMAIL PROTECTED] wrote:
#!/cbi/prg/python/current/bin/python
# -*- coding: iso-8859-1 -*-
import sys
import os
from progadn import *
...
for x in extseq:
f = open(x, "r")
seq=f.read()
f.close()
s=seq
def checkDNA(seq):
...
seq=checkDNA(seq)
print seq
You terminated the loop to define checkDNA.
What you want is:
...
from progadn import *
def checkDNA(seq):
...
...
for x in extseq:
f = open(x, "r")
seq=f.read()
f.close()
s=seq
seq = checkDNA(seq)
print seq
Even better might be:
...
from progadn import *
def checkDNA(seq):
...
def main():
...
for x in extseq:
f = open(x, "r")
try:
print checkDNA(f.read())
finally:
f.close()
if __name__ = '__main__':
main()
--Scott David Daniels
[EMAIL PROTECTED]
--
http://mail.python.org/mailman/listinfo/python-list
