In article 
<[EMAIL PROTECTED]>,
 blaine <[EMAIL PROTECTED]> wrote:

> Hey everyone,
>   For the regular expression gurus...
> 
> I'm trying to write a string matching algorithm for genomic
> sequences.

I strongly suggest you stop trying to reinvent the wheel and read up on the 
Biopython project (http://biopython.org/wiki/Main_Page).
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