Hi,
It seems that by just going through the problem writing out a better
explanation for the reply I have figured out a solution and the
problem isnt as difficult as I thought it would be.
What is a wontok?
Thanks
Nathan
PS --> the start of my reply:
class Interval(object):
_id = "gene1"
_start = 50
_end = 200
_strand = 1
class Sequence(object):
_sequence = "atgtcgtgagagagagttgtgag................."
> Only vaguely. You use several terms which appear to be from your trade
> jargon
Sequence is a string made from a restricted alphabet (A,T,G,C...).
Sequences can be aligned: 1 ATGCTGCAT
2 TAGCTGTTA
-------
2 5
I m trying to represent this as a graph Interval(id=1, start=2, end=6,
strand=1) ---edge------Interval(id=2, start=2, end=6, strand=1)
The problem is I was planning on storing the sequences in a dictionary
{id:Seq}, however each dictionary would represent a different source
of sequences. File1, File2....... (
STORE THE SOURCES AS A DICT AND HAVE SOURCE IN INTERVAL ASWELL
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