STINNER Victor <vstin...@python.org> added the comment:

I suspect that the timestamp set by os.utime() is not the one seen by 
os.stat(). Or maybe time.localtime() behavior changed.

Try attached utime_stat_localtime.py script.

Output on Fedora 31 in my home directory which uses btrfs:

$ python3.7 utime_stat_localtime.py 
os.utime (sec): 4386268800
os.stat (sec): 4386268800
os.stat (ns): 4386268800000000000
stat==utime? True
localtime: (2108, 12, 30, 1, 0, 0)

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Added file: https://bugs.python.org/file48869/utime_stat_localtime.py

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<https://bugs.python.org/issue39460>
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