Nick Coghlan added the comment:

Are you able to confirm the version of setuptools involved is the same in both 
cases?

The reason I ask is that the interaction between pkg_resources-style namespace 
packages and native ones is known to be temperamental 
(https://packaging.python.org/guides/packaging-namespace-packages/#creating-a-namespace-package),
 and the suggested resolution is to make sure that if you're using 
pkg_resources namespaces at all then *all* packages contributing to the 
namespace should be using them.

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Python tracker <rep...@bugs.python.org>
<http://bugs.python.org/issue29144>
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