Steve Dower added the comment:

The relevant lines are just above the ones you posted, but I can't view the 
attachment from my phone so I'll have to look later.

Seems like the custom action is running as the original user and not admin. 
This should just be a flag on the command, though since we're building the msi 
without any tools it'll take some effort to figure that out.

Personally I'd rather say it's not supported. Install without pip and then add 
it later. But if someone comes with a patch and test results I'll happily merge 
it.

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<http://bugs.python.org/issue30725>
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