Vinay Sajip added the comment:

I see why I couldn't reproduce the problem - there's no pip installed in the 
site-packages of the Pythons I was testing with, so the problem didn't show up.

Mark, can you apply the version of EnvBuilder.create that I posted in a message 
above and see if that resolves the issue for you on both OS X and Ubuntu? 
Thomas has confirmed that it works for him.

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<http://bugs.python.org/issue24875>
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