Larry Hastings added the comment: I did correct that "where is file X" problem; issue #20187 is a meta-issue for the whole Derby, and it has a list of all the issues and what files they map to. I'm sorry that this is not an optimal solution for organization, but it should be workable, and it only has to last us a week or two, and I felt like I was spending enough time trying to organize the Derby as it was.
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