Martin Mokrejs added the comment:

Hmm, but I did not add -DPy_LIMITED_API=1. Python 2.7.5 can be compiled using 
same configuration. Going back to the build.log file I see:

configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu 
--mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share 
--sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-fpectl 
--enable-shared --disable-ipv6 --with-threads --infodir=${prefix}/share/info 
--mandir=${prefix}/share/man --with-computed-gotos --with-dbmliborder=gdbm 
--with-libc= --enable-loadable-sqlite-extensions --with-system-expat 
--with-system-ffi --with-pydebug --without-pymalloc --with-valgrind


I specified only "--with-pydebug --without-pymalloc --with-valgrind". So where 
does the limited API come from? Bug in configure.ac?

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<http://bugs.python.org/issue18883>
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