Hi Justine, Have you tried with the official schrodinger::pymol package? If the user who wants to use your plugin has a PyMOL license, that should be the best option for him.
conda create -n pymol -c conda-forge python=3.7 rdkit=2020.03.3.0 matplotlib seaborn pip numpy schrodinger::pymol schrodinger::tk scikit-learn git You can also test this without a license, PyMOL will run in evaluation mode but your plugin should be fully functional. Cheers, Thomas > On Jan 27, 2021, at 1:46 AM, Justine Williams <justine.willi...@uwaterloo.ca> > wrote: > > Dear users, > > Could someone please help me with installing open source pymol on MacOS? I > created a plugin, but to allow it to be more easily available to users with > different OS, I need to include installation instructions for installing open > source pymol on each. I prepared some installation instructions for creating > a conda environment that works with Windows and Linux, but am having some > issues getting the installation to work consistently for the MacOS case. As a > note, I am not a Mac user myself, and have been trying to troubleshoot > remotely with the help of colleagues who own Macs. > > I need to have the rdkit package usable to pymol, which is why I was creating > the conda environment. The general conda steps that worked for Windows/Linux > were to install and activate Anaconda3 > (https://docs.anaconda.com/anaconda/install/mac-os/). Next, to open a > terminal in the Anaconda3 directory named "envs." Then to use the following > command to create an environment named pymol with the packages necessary: > > conda create -n pymol python=3.7 rdkit=2020.03.3.0 matplotlib seaborn pip > numpy conda-forge::pmw tpeulen::pymol-open-source scikit-learn git > > Finally, to activate the environment: > > conda activate pymol > > The error that is generated for this approach is “ImportError: > dlopen(/Users/FarFar/anaconda3/envs/pymol/lib/python3.7/site-packages/pymol/_cmd.cpython-37m-darwin.so, > 2): Symbol not found: _glAccum” > > I would really appreciate any assistance with installation for Mac cases, or > if anyone knows of known issues with this. As of now, it seems like using > homebrew to install open source pymol and rdkit might be the best approach to > take, but I have not been able to get that working. If there are other > strategies for installing open source pymol and rdkit I would really > appreciate the help. > > Thank you, > > Justine > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
