On 10 Nov 2020, at 12:48, Matt Dickinson via PyMOL-users <pymol-users@lists.sourceforge.net<mailto:pymol-users@lists.sourceforge.net>> wrote:
Hi, I have PyMol figures containing objects such as ribbons, sticks, spheres, etc. However, I have done a bit more refinement of the models and I would like to read the new coordinates into the pymol .pse file and redraw these objects from the new coordinates. Is there an easy way to do this? Matt Hi Matt, Load your updated coordinates as a new object and then update the corresponding object(s) in your existing session as described here: https://pymol.org/dokuwiki/doku.php?id=command:update One caveat to keep in mind is that, if your updated coordinates contain extra atoms compared to the original model, these are not automatically displayed when you transfer the information to your original object(s) (which makes sense, since those atoms did not exist before and were thuus not shown in the original session). So you have to tell PyMOL to also visualize them, if needed. HTH, Luca ---------------------------------------------------------------------- Luca Jovine, Ph.D. Professor of Structural Biology, Member of EMBO and the Nobel Assembly Karolinska Institutet Department of Biosciences and Nutrition Medicinaren 25 Neo Blickagången 16, SE-141 83 Huddinge, Sweden E-mail: luca.jov...@ki.se<mailto:luca.jov...@ki.se> W3: http://jovinelab.org ---------------------------------------------------------------------- När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifter<https://ki.se/medarbetare/integritetsskyddspolicy>. Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data here<https://ki.se/en/staff/data-protection-policy>.
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