Hi Zuben,
You need to import the colorbyrmsd.py script within your script, then you can
call it that way. For example your script could say:
import colorbyrmsd as cbr
for obj in seleobjs:
cmd.enable(obj)
cbr.colorbyrmsd(obj,target)
Cheers,
Rob
On Sat, 2020-10-31 20:36 +0000, "Brown, Zuben" <zb2...@cumc.columbia.edu>
wrote:
> Hi,
>
> I'd like to iterate using a script in pymol but one of the commands
> I'd like to use does not have an associated cmd.API. For example, how
> do I run:
>
> for obj in seleobjs:
> cmd.enable(obj)
> colorbyrmsd(obj, target) <--- This third line doesn't work since
> colorbyrmsd does not have a cmd.colorbyrmsd.
>
> Is there a way I can run something like:
> cmd.executecommand("colorbyrmsd {0}, target".format(obj)) ?
>
> Best regards,
>
> Zuben
--
Robert L. Campbell, Ph.D.
Academic Advisor, BHSc Program
Assistant Professor, Dept. of Biomedical & Molecular Sciences,
Queen's University, Kingston, ON K7L 3N6 Canada
Botterell Hall Rm 644 Tel: 613-533-6821
<robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc
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