Hi Petro, PyMOL is telling you to slow down the issuing of your commands. PyMOL needs time to catch up.
Try importing the time module and using the sleep function at strategic places in your code https://www.datacamp.com/community/tutorials/python-time-sleep Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology College of Medicine University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center (BRC) Rm. 466 975 NE 10th Street, BRC 466 Oklahoma City, OK 73104-5419 ________________________________________ From: Piter_ [x.pi...@gmail.com] Sent: Monday, September 07, 2020 7:40 AM To: pymol-users@lists.sourceforge.net Subject: [EXTERNAL] [PyMOL] Cmd: PyMOL lagging behind API requests... Hi. I try to run pymol via python in batch mode. It works fine if I define all variables in the python file. But it stops working when I send variables as cli arguments. With multiple messages like : Cmd: PyMOL lagging behind API requests... Any hints? Thanks. Petro. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
