Re: [PyMOL] choice of color in util.cbc

[Chen, Qiang]

Thanks!

This works well. "Spectrum chain" is more flexible and powerful in this case.

Charles



________________________________
From: Thomas Holder <thomas.hol...@schrodinger.com>
Sent: Tuesday, July 14, 2020 2:24 PM
To: Chen, Qiang <q...@pitt.edu>
Cc: pymol-users@lists.sourceforge.net <pymol-users@lists.sourceforge.net>
Subject: Re: [PyMOL] choice of color in util.cbc

Hi Charles,

The `first_color` argument is only active with `legacy=1`.

  util.cbc 6uwz, first_color=1, legacy=1

Other options for coloring by chain:

  spectrum chain, rainbow, 6uwz

  spectrum chain, blue green red yellow, 6uwz


Hope that helps.

Cheers,
  Thomas


> On Jul 14, 2020, at 7:18 PM, Chen, Qiang <q...@pitt.edu> wrote:
>
> Hi, Pymol Users
>
> Is it possible to choose different color pattern when using util.cbc?
>
> Wiki says I could use the following to choose the first_color
>
> util.cbc 6uwz, first_color=1, quiet=0
>
> 6uwz is just an example of a pentameric protein.
>
> However, there is no change when specify any other number for first_color. It 
> always starts with cyan on the first chain.
>
> I know I can color the chain individually. I am just puzzled that util.cbc 
> behaves this way.
>
> I am using open-source pymol2.5.0a0 running on windows 10.
>
> Thanks!
>
> Charles
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--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.



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