Hello everybody, I am doing molecular simulation using GROMACS program and I visualize the output (.pdb) using Pymol. I am inserting 4000 molecule inside a box, one molecule at a time, and after every insertion I convert the output into a .pdb file so at the end I have 4000 .pdb file. I want to generate a video to see where each new atom is inserted. This means that I need to open (load) the 4000 file and then display them in a sequence so that each new molecule will be clear where it was inserted. can you please guide me how to do that ?
I am using Ubuntu system and I always open pymol using the interface (not the terminal). I have searched online how can I do that, but I didn't find how to do it. Can you please help me. Many thanks, Mohamed
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