Hi Arthur -
The `transparency` setting affects only surface representations. I believe
you're looking for `set cartoon_transparency, 0.8, sele`.
https://pymolwiki.org/index.php/Cartoon_transparency
Hope that helps.
Cheers,
Jared
On November 30, 2018 at 3:41:57 AM, sunyeping via PyMOL-users
(pymol-users@lists.sourceforge.net) wrote:
Dear all,
Could you please check this figure at the following link?
https://drive.google.com/file/d/1Uh9JRh7x0sjv-zGp_0ZKPc1cnWotkZA0/view?usp=sharing
The structure in blue in this figure is prepared from chain A of pdb id 4gms.
Some residues are highlighted and look sharp ( as indicated in the figure:
130-loop, 150-loop, 190-helix and 220-loop, and the corresponding residues are:
residues 134-138, 155-163, 188-195, 221-228, respectively), while other part
of the structure look blurry.
I wish to repeat this visual effect but don't know how. I try to select the
residues and use "set transparency" command:
set transparency, 0.8, sele
but it doesn't work.
Could anyone help me figure it out？ With sincere thanks.
Arthur
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