Hi Lenka,
Let me first state that the command "help load_traj" points to the webpage
which in turns says that the .nc format is supported by pymol.
I come from the gromacs background. Once you load the topology/state of
your system (in my case .gro or .pdb), then use "load_traj", ie
*load_traj trajectory.nc <http://trajectory.nc> *
There are other options for this command (start, end, shift, etc).
Hope this helps, Mat
On Mon, Jul 23, 2018 at 11:42 AM Stejskal, Lenka <
lenka.stejskal...@ucl.ac.uk> wrote:
> Dear Pymol users,
>
>
> Can somebody advise how I can open amber trajectory file in .nc format?
>
>
> Thank you
>
>
> Lenka
>
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