Hi Mohammad -
The `align` function (https://pymolwiki.org/index.php/Align) does a
sequence-based (as opposed to structural-based) alignment of different objects.
If you need to use a specific alignment from an external program, see Thomas
Holder's post to this mailing list from last week:
https://sourceforge.net/p/pymol/mailman/message/36193233/
Hope that helps,
Cheers,
Jared
On January 26, 2018 at 6:12:25 PM, Mohammad Goodarzi
(mohammad.goda...@gmail.com) wrote:
Jared,
Thanks for your message. Do you know how to align several proteins based on
their similar domain ? I mean overlap them based on their similar sequence that
I know the read ?
Thanks
Mohammad
On Fri, Jan 26, 2018 at 3:53 PM, Jared Sampson <jared.samp...@columbia.edu>
wrote:
Hi Mohammad -
If you know the residue numbers at the domain boundaries, you can do this at
the command line with, e.g.:
color red, chain A and resi 1-100
color cyan, chain A and resi 101-200
etc.
Hope that helps.
Cheers,
Jared
On January 26, 2018 at 4:48:43 PM, Mohammad Goodarzi
(mohammad.goda...@gmail.com) wrote:
Hello,
I have a sequence and I obtain various domains. I want to show them with
various colors.
How can one do that? for example can one of you show it on SIRT1
Thanks
Mohammad
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