Hi Ricardo - 

On recent versions of PyMOL, there should be a scroll bar associated with the 
object list.  What version of PyMOL are you using?  If it is older, might I 
suggest trying out the recently released PyMOL 2?  https://pymol.org/2/

Alternatively, if you know the name of the PDB file, the object name should be 
the part of the file name before the extension (e.g. 1abc.pdb becomes '1abc'), 
so you can color via entering commands at either the internal command prompt 
(at the bottom of the graphics window), or the one in the Tcl/Tk window, like 
this:

        color red, 1abc

Hope that helps,

Cheers,
Jared

On December 27, 2017 at 12:49:49 AM, ricardo.ro...@ku.edu 
(ricardo.ro...@ku.edu) wrote:

Hello.

I load some PDB files for visualization which is just fine, but some of the 
files are not shown in the object list on the right of the GUI, so I can't 
change colors or display types.

How can I fix that?

Thanks.
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